RNA-seq Analisys Course

Welcome to my tutorial

RNA-seq Analisys Course

Here you can find a tutorials collection to support the course.

Welcome to this course

Agenda, resources and other useful information

 Introduction

RNA-seq Introduction

RNA-seq Introduction

 Warm Up with RNA-seq data

Warm Up with RNA-seq data

 RNA-seq part 2 DESeq2

RNA-seq data analyss Count

 Practical Salmon

Practical 3 Salmon tutorial

 Practical Hisat2

Practical 4 Hisat2

Practical Differential expression analysis with edgeR

Practical 5: Differential expression analysis with edgeR

 Practical galaxy Rna-seq

Other galaxy on trascriptomics

Fusion tutorial

Fusion tutorial

 RNA-Seq data analysis

RNA-seq data analyss with different approachs.

 Bioinformatics approach examples

We have many way to write our pipelines. Each approach have some problems. We need to use take in mind what we need to do.

 Appendix on Ribo-seq

Resource for Ribo-seq

Authors and Contributors

Acknowledgement

I would like to say thank you to Gianmauro Cuccuru for the great help.

Contributing

If you’ve found mistakes or any other kind of material you think should be shared through this repository you can:

  1. Fork this repository.
  2. Add your content on the appropriate page.
  3. Commit your changes.
  4. Submit a pull request.