Welcome to my Tutorial on RNA-Seq and Somatic-seq

Course 22-23 march 2018

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Here you can find a tutorials collection to support the course.

Welcome and introduction

Agenda, resources and other useful information

RNA-Seq data analysis

RNA-Seq computational approach tutorial approachs.

Fusioncatcher

Agenda, resources and other useful information

Tutorial for the CTAT Fusion Toolkit, leveraging STAR-Fusion, FusionInspector, and Trinity

Tutorial for the CTAT Fusion Toolkit, leveraging STAR-Fusion, FusionInspector, and Trinity from official github.

Call variants

Somatic calling variants.

Authors and Contributors

• Polano Maurizio

Acknowledgement

I would like to say thank you to Gianmauro Cuccuru for the great help.

Contributing

If you’ve found mistakes or any other kind of material you think should be shared through this repository you can:

1. Fork this repository.
2. Add your content on the appropriate page.
3. Commit your changes.
4. Submit a pull request.